rs801184 chr5:140711225 A>G
- Sequence
tctctttttgactcactctttgtg[A/G]cgtaggtctttctcaccagtcaat
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) HAEC (human aortic endothelial cells) CD14+ monocytes
- ASB for transcription factors
- ATF3_HUMAN CREM_HUMAN ATF7_HUMAN JUN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF3_HUMAN | 1.75 | -1.06 | 1.87 | -6.87 | Concordant | |||
| CREM_HUMAN | 3.20 | n/a | 2.00 | n/a | No Hit | |||
| ATF7_HUMAN | 2.66 | n/a | 2.00 | n/a | n/a | |||
| JUN_HUMAN | 1.83 | -0.34 | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 1.68 | n/a | 2.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Uterus, Whole_Blood