rs80267269 chr7:4641852 C>G
- Sequence
cgcaaccttaaggcgcatgcgcgg[C/G]cggcgcagacttgcggaaggctcc
- ASB in cell types
- HepG2 (hepatoblastoma) CD14+ monocytes breast tumor tissue U2OS (osteosarcoma)
- ASB for transcription factors
- CTCF_HUMAN NRF1_HUMAN STAT1_HUMAN BMAL1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.66 | 0.23 | 1.22 | n/a | No Hit | |||
| NRF1_HUMAN | 1.05 | -1.27 | 1.33 | 0.86 | Weak Discordant | |||
| STAT1_HUMAN | 2.50 | -0.44 | 2.50 | n/a | No Hit | |||
| BMAL1_HUMAN | -0.68 | 1.71 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 1.71 | n/a | 2.50 | n/a | No Hit |
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Motif analysis
