rs8032104 chr15:63108385 A>G
- Sequence
aaccccctcacactgaaggcagct[A/G]ttttcattaggcctgtcacaaaat
- ASB in cell types
- SK-N-SH (neuroblastoma)
- ASB for transcription factors
- HTF4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HTF4_HUMAN | -1.45 | 1.78 | 1.33 | 6.16 | Concordant |
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Motif analysis
Genetic associations
GRASP chronic kidney disease, cystatin c in serum, diastolic blood pressure (dbp), hdl cholesterol, irritible bowel syndrome, mitral annular calcium, serum creatinine, spine bone mineral density (bmd), systolic blood pressure (sbp), triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Hippocampus, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood