rs80335740 chr4:38069363 C>T
- Sequence
gcttcttagccccctacctgtagg[C/T]ggtgctctgggaacgctcaggaag
- ASB in cell types
- A549 (lung carcinoma) K562 (myelogenous leukemia) IPSC-derived bipolar neuron bipolar neuron
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SPI1_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.70 | 1.38 | 1.53 | 2.56 | Concordant | |||
| RAD21_HUMAN | 1.32 | 1.83 | 1.39 | n/a | n/a | |||
| SPI1_HUMAN | 0.98 | 1.79 | 2.12 | n/a | No Hit | |||
| SMC3_HUMAN | n/a | 1.29 | 1.33 | n/a | n/a |
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Motif analysis
