rs8047143 chr16:1299658 T>G
- Sequence
tgacctacagcgtatttcaccacg[T/G]caggtgaaacctgagaaccgcggg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) T47D (invasive ductal carcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- CREB1_HUMAN ATF1_HUMAN HIF1A_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | 2.03 | -1.73 | 2.00 | n/a | No Hit | |||
| ATF1_HUMAN | 2.17 | -3.04 | 1.50 | n/a | No Hit | |||
| HIF1A_HUMAN | 1.98 | -1.55 | 2.00 | -4.30 | Concordant | |||
| ESR1_HUMAN | 0.63 | -0.18 | 1.68 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Esophagus_Mucosa, Liver, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid