rs805305 chr6:31729610 C>G
- Sequence
cgcagggactggaagtccagcccg[C/G]gacccgcaggggttatgggacaga
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma) keratinocytes
- ASB for transcription factors
- NCOR1_HUMAN EGR1_HUMAN ZNF24_HUMAN SNAI2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NCOR1_HUMAN | n/a | 2.79 | 4.33 | n/a | n/a | |||
| EGR1_HUMAN | n/a | 2.62 | 4.00 | n/a | No Hit | |||
| ZNF24_HUMAN | 0.49 | 1.94 | 2.60 | n/a | n/a | |||
| SNAI2_HUMAN | 2.21 | -3.09 | 1.50 | n/a | No Hit | |||
| KLF13_HUMAN | n/a | 1.02 | 3.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP chronic kidney disease, diabetic retinopathy in type 2 diabetes mellitus, diastolic blood pressure (dbp), hdl cholesterol, microalbuminuria, rheumatoid arthritis, serum creatinine, systolic blood pressure (sbp), triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood