rs807622 chr2:15642631 A>G
- Sequence
tggagcctagcttcctgatatttc[A/G]caaggggtgaaatgtaaagaatgt
- ASB in cell types
- HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma) SK-BR-3 (breast adenocarcinoma) Ishikawa (endometrial adenocarcinoma)
- ASB for transcription factors
- CEBPA_HUMAN ESR1_HUMAN ETV5_HUMAN CEBPG_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPA_HUMAN | -1.46 | 2.76 | 2.00 | -1.68 | Weak Discordant | |||
| ESR1_HUMAN | -0.17 | 1.67 | 1.67 | n/a | No Hit | |||
| ETV5_HUMAN | n/a | 2.44 | 2.00 | n/a | No Hit | |||
| CEBPG_HUMAN | -3.62 | 2.51 | 2.00 | n/a | No Hit | |||
| EP300_HUMAN | n/a | 1.85 | 1.33 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Cells_Cultured_fibroblasts, Heart_Left_Ventricle, Lung, Ovary, Pancreas, Pituitary, Thyroid