rs812583 chr3:194685776 C>G
- Sequence
cctttaagaaaccaggaatccgcc[C/G]ggagtcggagcccaaaacagatcc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) foreskin keratinocyte
- ASB for transcription factors
- CHD1_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CHD1_HUMAN | -1.84 | 1.64 | 1.33 | n/a | n/a | |||
| CREB1_HUMAN | -0.87 | 1.37 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood