rs812821 chr4:1712434 T>C
- Sequence
acgccgcaggggtccactcagctg[T/C]gcgcgcctcgcgagccgactgggg
- ASB in cell types
- LNCaP (prostate carcinoma) fetal bone marrow-derived mononuclear cells breast tumor tissue MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- E2F1_HUMAN ESR1_HUMAN KMT2A_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| E2F1_HUMAN | 1.41 | 0.10 | 1.33 | n/a | No Hit | |||
| ESR1_HUMAN | 0.26 | 2.36 | 2.33 | n/a | No Hit | |||
| KMT2A_HUMAN | -0.33 | 2.07 | 1.25 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood