rs816407 chr7:56106447 G>T
- Sequence
gcgacggctaggcctccggacgtg[G/T]gacaaccaccgaagagctaagcga
- ASB in cell types
- GM12878 (female B-cells) SK-N-SH (neuroblastoma) hMADS-3 (adipose-derived stem cells) LNCaP (prostate carcinoma)
- ASB for transcription factors
- GABPA_HUMAN STAT1_HUMAN KLF11_HUMAN RXRA_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABPA_HUMAN | 1.51 | 0.37 | 1.69 | -1.77 | Weak Concordant | |||
| STAT1_HUMAN | -1.12 | 1.48 | 2.00 | n/a | No Hit | |||
| KLF11_HUMAN | 1.64 | -1.29 | 1.33 | n/a | n/a | |||
| RXRA_HUMAN | 1.75 | -1.78 | 1.33 | n/a | No Hit | |||
| CREB1_HUMAN | 1.23 | 0.06 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Testis, Thyroid, Vagina, Whole_Blood