rs816949 chr20:64054849 T>C
- Sequence
acaatcaacaaatccacaaacagg[T/C]gtggtgactcatgcctgtaatccc
- ASB in cell types
- K562 (myelogenous leukemia) keratinocytes HepG2 (hepatoblastoma)
- ASB for transcription factors
- EGR1_HUMAN SNAI2_HUMAN ATF3_HUMAN ARI1B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EGR1_HUMAN | n/a | 3.51 | 2.00 | n/a | No Hit | |||
| SNAI2_HUMAN | 2.00 | -0.73 | 1.50 | -4.45 | Concordant | |||
| ATF3_HUMAN | n/a | 2.79 | 2.00 | n/a | No Hit | |||
| ARI1B_HUMAN | n/a | 2.75 | 2.00 | n/a | n/a | |||
| KDM1A_HUMAN | 0.23 | 2.24 | 1.67 | n/a | n/a |
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Motif analysis
