rs817310 chr20:63949289 C>G
- Sequence
ggcgccaagacgaccaggcgaggg[C/G]ggcccgggggacagcaccactgca
- ASB in cell types
- NB69 (neuroblastoma) LNCaP (prostate carcinoma) LNCaP C4-2B (prostate carcinoma) K562 (myelogenous leukemia)
- ASB for transcription factors
- CTCF_HUMAN PKNX1_HUMAN HTF4_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.34 | 0.54 | 1.39 | -4.29 | Concordant | |||
| PKNX1_HUMAN | -2.01 | 1.80 | 1.50 | n/a | No Hit | |||
| HTF4_HUMAN | n/a | 2.29 | 2.00 | n/a | No Hit | |||
| FOXK2_HUMAN | -1.01 | 0.67 | 1.42 | n/a | n/a | |||
| ZF64A_HUMAN | 1.53 | -1.78 | 1.33 | n/a | n/a |
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Motif analysis
