rs817311 chr20:63949375 A>G
- Sequence
cccgagaccgcatgcgggggctgc[A/G]gctggaatgggacctgcaccccac
- ASB in cell types
- HepG2 (hepatoblastoma) ICN12 (primary pre-B acute lymphomablastic leukemia) LNCaP C4-2B (prostate carcinoma) LNCaP (prostate carcinoma)
- ASB for transcription factors
- PBX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PBX1_HUMAN | -1.47 | 1.25 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pituitary, Whole_Blood