rs817353 chr20:63981045 G>C
- Sequence
cgcggccggaagtcgtcgaaccag[G/C]acgtcgggacttccgcccagggaa
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) CD14+ monocytes
- ASB for transcription factors
- STAT1_HUMAN CLOCK_HUMAN SPI1_HUMAN NCOA2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 1.48 | n/a | 2.50 | n/a | No Hit | |||
| CLOCK_HUMAN | n/a | 2.69 | 2.50 | n/a | No Hit | |||
| SPI1_HUMAN | 1.48 | -0.48 | 2.21 | n/a | No Hit | |||
| NCOA2_HUMAN | -2.35 | 2.40 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Spleen, Whole_Blood