rs818182 chr2:10487418 G>A
- Sequence
gccatcagattaggggctttgaaa[G/A]gtcaaggggagaatgatgctgtgg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) SK-BR-3 (breast adenocarcinoma) LY-2 (invasive ductal carcinoma) MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant)
- ASB for transcription factors
- ESR1_HUMAN ERR1_HUMAN COT2_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.31 | 0.19 | 1.55 | n/a | No Hit | |||
| ERR1_HUMAN | 1.75 | -0.97 | 1.46 | -4.19 | Concordant | |||
| COT2_HUMAN | 2.48 | -2.83 | 1.33 | -7.99 | Concordant | |||
| FOXA1_HUMAN | 0.98 | 0.43 | 1.65 | n/a | No Hit | |||
| HDAC2_HUMAN | 1.73 | -1.62 | 1.33 | n/a | n/a |
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Motif analysis
