rs820156 chr17:75667292 A>T
- Sequence
agtgtggcgcgggggtctcctggg[A/T]tccgaaagaacctgcctttccgcc
- ASB in cell types
- K562 (myelogenous leukemia) HCT-116 (colon carcinoma) SK-N-SH (neuroblastoma) GM12878 (female B-cells)
- ASB for transcription factors
- COE1_HUMAN EMSY_HUMAN FOXK2_HUMAN GABPA_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COE1_HUMAN | 2.51 | -3.24 | 1.50 | -3.00 | Concordant | |||
| EMSY_HUMAN | 0.36 | n/a | 2.00 | n/a | n/a | |||
| FOXK2_HUMAN | 1.29 | -0.04 | 1.78 | n/a | n/a | |||
| GABPA_HUMAN | 1.35 | 0.40 | 1.92 | n/a | No Hit | |||
| ELF1_HUMAN | 1.70 | 0.21 | 1.93 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Whole_Blood