rs820387 chr17:75750065 T>C
- Sequence
tgggtctctggcgccccctggtgg[T/C]gaagggggatctgagtggttgccc
- ASB in cell types
- A549 (lung carcinoma) erythroid progenitors HeLa Kyoto (cervical adenocarcinoma) pancreas
- ASB for transcription factors
- RAD21_HUMAN SMC3_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | -0.11 | 1.66 | 2.82 | n/a | n/a | |||
| SMC3_HUMAN | -0.23 | 1.21 | 2.37 | n/a | n/a | |||
| CTCF_HUMAN | 0.46 | 1.23 | 1.71 | 2.66 | Concordant |
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Motif analysis
