rs820617 chr3:27294019 T>C
- Sequence
ttattttgtttctagcctgctatg[T/C]atacctcaatatttatatggtttc
- ASB in cell types
- breast tumor tissue ZR-75-1 (invasive ductal carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.76 | 0.25 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 1.99 | 0.09 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Skin_Sun_Exposed_Lower_leg, Testis