rs823114 chr1:205750404 G>A
- Sequence
agtcaagatgctctgagagcgcac[G/A]gccgcaaaacaaaaatggtcgctg
- ASB in cell types
- HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) HepG2 (hepatoblastoma) A549 (lung carcinoma)
- ASB for transcription factors
- CREB1_HUMAN JUN_HUMAN FOXK2_HUMAN ZSCA2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | 1.48 | -0.35 | 1.58 | n/a | No Hit | |||
| JUN_HUMAN | 1.60 | -0.82 | 1.90 | n/a | No Hit | |||
| FOXK2_HUMAN | -0.09 | 1.93 | 1.33 | n/a | n/a | |||
| ZSCA2_HUMAN | 1.89 | -1.01 | 1.67 | n/a | n/a | |||
| SP1_HUMAN | 1.31 | 0.16 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
EMBL-EBI alcohol consumption (drinks per week), alcohol consumption (drinks per week) (mtag), body mass index, hdl cholesterol, parkinsons disease
GRASP acute interstitial lung disease in gefitinib-treated non-small cell lung cancer, age at menarche, alzheimers disease, body mass index (bmi), hdl cholesterol, height, obesity with early age of onset (age >2), parkinsons disease, parkinsons disease (pd), sporadic creutzfeldt-jakob disease
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood