rs830158 chr19:47436805 C>T
- Sequence
gtacaagtgtcgtagtgtctctag[C/T]cacaagggggcagtgtgggcctgt
- ASB in cell types
- foreskin keratinocyte A549 (lung carcinoma) esophagus muscularis mucosa liver
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.87 | 0.36 | 1.48 | -4.77 | Concordant | |||
| SMC3_HUMAN | 0.94 | 0.28 | 1.46 | n/a | n/a | |||
| RAD21_HUMAN | 0.86 | 0.27 | 1.44 | n/a | n/a |
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Motif analysis
