ADASTRA v1.6.10
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rs831486
chr6:37033491
T
>
C
Sequence
gtctctgtatcccagggcttagca[T/C]gtagcaagtgcttgaaaaataccc
ASB in cell types
K562 (myelogenous leukemia)
periferal blood macrophages
ASB for transcription factors
ATF2_HUMAN
MEIS2_HUMAN
ATF3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
Color scale
-log10 FDR of Ref (
T
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ATF2_HUMAN
2.81
n/a
2.2·10
-3
1.00
3.00
n/a
No Hit
MEIS2_HUMAN
2.82
n/a
0.03
1.00
3.00
n/a
No Hit
ATF3_HUMAN
2.88
n/a
0.04
1.00
3.00
n/a
No Hit
Items per page:
5
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GRASP
2 hour glucose
,
body mass index (bmi)
,
diabetic retinopathy in type 2 diabetes mellitus
,
ldl cholesterol
,
total cholesterol
GTEx eQTL
Esophagus_Mucosa
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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log2(Alt/Ref motif p-value)