rs833824 chr12:48956647 T>C
- Sequence
tggggaggaaggccccacctctct[T/C]ctcccaggaagatcagatccccct
- ASB in cell types
- HEK293 (embryonic kidney) HEK293T (embryonic kidney)
- ASB for transcription factors
- ZN341_HUMAN MZF1_HUMAN PKNX1_HUMAN WT1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN341_HUMAN | n/a | 2.10 | 2.00 | n/a | No Hit | |||
| MZF1_HUMAN | n/a | 2.47 | 2.00 | n/a | No Hit | |||
| PKNX1_HUMAN | 2.11 | -1.49 | 2.00 | n/a | No Hit | |||
| WT1_HUMAN | n/a | 2.48 | 2.00 | 3.52 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Thyroid, Whole_Blood