rs838493 chr12:124681500 A>G
- Sequence
ccaagaagcctagaagagtgactc[A/G]accctttacagagaaagagtttgc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) coronary artery smooth muscle HL-60 (acute myeloid leukemia) SK-N-SH (neuroblastoma)
- ASB for transcription factors
- ESR1_HUMAN FOS_HUMAN SKI_HUMAN JUN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.19 | 0.01 | 1.51 | n/a | No Hit | |||
| FOS_HUMAN | 2.76 | n/a | 1.50 | n/a | n/a | |||
| SKI_HUMAN | 3.24 | n/a | 1.50 | n/a | n/a | |||
| JUN_HUMAN | 2.29 | -0.06 | 1.71 | -5.20 | Concordant | |||
| RAD21_HUMAN | 1.76 | 0.07 | 1.47 | n/a | n/a |
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Motif analysis
