rs841840 chr1:42924454 C>G
- Sequence
cgtgtccgtgcgccgccggtggcc[C/G]ggcttaggggaccgctgtgaggtc
- ASB in cell types
- HEK293 (embryonic kidney) HEK293T (embryonic kidney) GM12878 (female B-cells) epithelial cell of prostate
- ASB for transcription factors
- CTCF_HUMAN LMBL2_HUMAN SP2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.28 | 1.03 | 1.26 | n/a | No Hit | |||
| LMBL2_HUMAN | -1.90 | 1.68 | 1.50 | n/a | n/a | |||
| SP2_HUMAN | -1.49 | 1.26 | 2.00 | 4.85 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Frontal_Cortex_BA9, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Thyroid