rs841846 chr1:42938000 C>T
- Sequence
caaggagtgttgtttgtcaaacaa[C/T]tgaggcctttctggcccaaactct
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) K562 (myelogenous leukemia) LNCaP (prostate carcinoma)
- ASB for transcription factors
- ESR1_HUMAN FOXA1_HUMAN PKNX1_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | -0.12 | 1.19 | 2.05 | n/a | No Hit | |||
| FOXA1_HUMAN | -0.04 | 1.02 | 1.94 | n/a | No Hit | |||
| PKNX1_HUMAN | -0.50 | 1.51 | 1.67 | n/a | No Hit | |||
| ANDR_HUMAN | 0.35 | 1.10 | 1.60 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid