rs845553 chr7:55178024 G>A
- Sequence
gatgttagtaggatggggcctggc[G/A]gggctccaggctctgtgtggccga
- ASB in cell types
- HepG2 (hepatoblastoma) breast tumor tissue
- ASB for transcription factors
- NFIA_HUMAN ESR1_HUMAN SOX13_HUMAN TFAP4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFIA_HUMAN | -2.67 | 2.48 | 1.33 | 1.82 | Weak Concordant | |||
| ESR1_HUMAN | 2.51 | n/a | 2.50 | n/a | No Hit | |||
| SOX13_HUMAN | -2.69 | 2.26 | 1.42 | n/a | n/a | |||
| TFAP4_HUMAN | n/a | 2.26 | 1.50 | n/a | No Hit | |||
| ANDR_HUMAN | 0.17 | 0.57 | 1.45 | n/a | No Hit |
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Motif analysis
