rs8583 chr6:2990961 C>T
- Sequence
cttaggatagacttaaagcctctg[C/T]acctggaactgtttactttcctgt
- ASB in cell types
- K562 (myelogenous leukemia) SKH1 (chronic myelogenous leukemia, BCR-ABL1 positive)
- ASB for transcription factors
- IKZF1_HUMAN ZEB2_HUMAN HDAC2_HUMAN KDM1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | n/a | 0.64 | 3.00 | n/a | No Hit | |||
| ZEB2_HUMAN | n/a | 2.96 | 3.00 | n/a | n/a | |||
| HDAC2_HUMAN | n/a | 2.85 | 3.00 | n/a | n/a | |||
| KDM1A_HUMAN | n/a | 0.68 | 3.00 | n/a | n/a | |||
| HDAC1_HUMAN | -2.83 | 2.50 | 3.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Brain_Caudate_basal_ganglia, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Testis, Thyroid, Whole_Blood