rs867053 chr10:5845207 G>A
- Sequence
ataaattaacccaggcagtgcgga[G/A]ctggccatggccaatttatagtca
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells)
- ASB for transcription factors
- PKNX1_HUMAN ELF1_HUMAN MEIS2_HUMAN REQU_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | n/a | 2.17 | 1.75 | n/a | No Hit | |||
| ELF1_HUMAN | -2.28 | 2.19 | 1.33 | 4.46 | Concordant | |||
| MEIS2_HUMAN | n/a | 0.72 | 2.00 | n/a | No Hit | |||
| REQU_HUMAN | -2.91 | 2.02 | 2.00 | n/a | n/a | |||
| HDAC1_HUMAN | -1.19 | 1.77 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid