rs869020 chr17:2041931 T>G
- Sequence
ttttgccgttgtcatgggaacgcc[T/G]tggcgctccgaggcccgccctcgg
- ASB in cell types
- A549 (lung carcinoma) cranial neural crest cells liver
- ASB for transcription factors
- AP2A_HUMAN JUN_HUMAN FOXK2_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| AP2A_HUMAN | 2.82 | n/a | 2.00 | n/a | No Hit | |||
| JUN_HUMAN | -0.70 | 1.14 | 3.00 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.67 | -1.30 | 1.33 | n/a | n/a | |||
| RAD21_HUMAN | 0.34 | 0.86 | 2.64 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP adiponectin levels, advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid, Uterus, Vagina, Whole_Blood