rs871014 chr17:29618321 T>C
- Sequence
cagggccgccgccctcccagggca[T/C]ccggctgggataagcaacgcgcga
- ASB in cell types
- K562 (myelogenous leukemia) 786-O (renal carcinoma)
- ASB for transcription factors
- CTCF_HUMAN NRF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.62 | 0.63 | 1.27 | n/a | No Hit | |||
| NRF1_HUMAN | -1.21 | 1.79 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP diastolic blood pressure (dbp), height, infant head circumference, systolic blood pressure (sbp)
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Lung, Minor_Salivary_Gland, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood