rs875742 chr5:173860760 G>A
- Sequence
tccctctgcccagagccttccggg[G/A]acgccagccagccaggccctgctg
- ASB in cell types
- K562 (myelogenous leukemia) CD34+ hematopoietic stem cells-derived proerythroblasts pancreas
- ASB for transcription factors
- NCOR1_HUMAN TIF1A_HUMAN NFIC_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NCOR1_HUMAN | 2.09 | -2.59 | 2.00 | n/a | n/a | |||
| TIF1A_HUMAN | 1.79 | -1.33 | 2.00 | n/a | n/a | |||
| NFIC_HUMAN | 2.26 | n/a | 2.00 | -3.24 | Concordant | |||
| CTCF_HUMAN | -0.28 | 1.60 | 1.17 | -3.00 | Discordant | |||
| HTF4_HUMAN | 2.00 | -0.30 | 2.00 | n/a | No Hit |
Items per page:
1 – 5 of 7
Motif analysis
