rs875897 chr7:27161236 C>G
- Sequence
agcccaccgcaccccactcccaaa[C/G]gaggggcgtgggcctaggtcccgg
- ASB in cell types
- K562 (myelogenous leukemia) foreskin keratinocyte HEK293 (embryonic kidney) MM1.S (plasma cell myeloma)
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| K562 (myelogenous leukemia) | -0.08 | 0.70 | 1.95 | |||
| foreskin keratinocyte | n/a | 0.82 | 2.50 | |||
| HEK293 (embryonic kidney) | 0.35 | 0.55 | 1.50 | |||
| MM1.S (plasma cell myeloma) | -0.30 | 1.14 | 1.37 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid, Whole_Blood