rs877599 chr17:45099254 G>A
- Sequence
ttggcagcactcactgtggggagg[G/A]ggaggctggagagcagggtgacac
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) foreskin keratinocyte ascending aorta
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN PRD10_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.14 | 0.48 | 1.69 | n/a | No Hit | |||
| RAD21_HUMAN | 1.24 | -0.24 | 2.73 | n/a | n/a | |||
| PRD10_HUMAN | 1.81 | -2.74 | 2.00 | n/a | n/a | |||
| SMC3_HUMAN | 0.99 | -0.60 | 2.83 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood