rs883270 chr4:37802312 C>A
- Sequence
ccactgcaccacactgcctcccag[C/A]tacctggtgataaaaagcaaggca
- ASB in cell types
- SK-N-SH (neuroblastoma) SH-SY5Y (neuroblastoma) gastroesophageal sphincter adrenal gland
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.35 | 0.29 | 1.56 | -1.88 | Weak Concordant | |||
| RAD21_HUMAN | 1.37 | -0.52 | 1.37 | n/a | n/a | |||
| FOXK2_HUMAN | 1.41 | n/a | 1.33 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Spleen, Stomach, Thyroid, Whole_Blood