rs892090 chr19:55027704 T>G
- Sequence
ccgtgatgatgggaaaactagccc[T/G]gtaccatctctcgggattcttgta
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- CDC5L_HUMAN EGR1_HUMAN REST_HUMAN NCOR1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CDC5L_HUMAN | 2.39 | -3.65 | 2.00 | n/a | n/a | |||
| EGR1_HUMAN | 1.73 | -0.88 | 2.00 | n/a | No Hit | |||
| REST_HUMAN | 1.95 | n/a | 2.00 | n/a | No Hit | |||
| NCOR1_HUMAN | 1.50 | -0.69 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Whole_Blood