rs9083 chr16:57994956 G>A
- Sequence
gcattgtgacagagagccagcacc[G/A]aggggaaggaccagcccctccctg
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) HEK293 (embryonic kidney) CD14+ monocytes
- ASB for transcription factors
- CTCF_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.41 | 0.83 | 1.53 | 2.10 | Concordant | |||
| STAT1_HUMAN | -2.99 | 1.94 | 2.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP fasting insulin, hdl cholesterol, homa-ir, partial epilepsy, refractive error, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Uterus, Whole_Blood