rs917864 chr22:17085042 T>C
- Sequence
gaaaagaaagcctcagaacgttcg[T/C]tcgctgcgtccccagccggggccg
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) CD14+ monocytes fetal bone marrow-derived mononuclear cells
- ASB for transcription factors
- STAT1_HUMAN GLIS1_HUMAN BC11B_HUMAN MNT_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | -3.82 | 2.33 | 2.50 | n/a | No Hit | |||
| GLIS1_HUMAN | 1.90 | n/a | 2.00 | n/a | n/a | |||
| BC11B_HUMAN | 1.92 | -1.77 | 2.00 | n/a | n/a | |||
| MNT_HUMAN | -0.56 | 1.15 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, hdl cholesterol, ldl cholesterol, ldl cholesterol change with statins, obesity with early age of onset (age >2), total cholesterol, total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood