rs921408 chr7:32490587 A>C
- Sequence
ttaccatctcggcagatacccata[A/C]tgcccttgaagttttggagagacg
- ASB in cell types
- GM12878 (female B-cells) HEK293 (embryonic kidney) A549 (lung carcinoma) liver
- ASB for transcription factors
- ZN143_HUMAN ZFHX2_HUMAN CTCF_HUMAN JUN_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN143_HUMAN | 2.19 | -2.45 | 1.33 | n/a | No Hit | |||
| ZFHX2_HUMAN | 2.57 | n/a | 1.33 | n/a | n/a | |||
| CTCF_HUMAN | 0.38 | 0.90 | 1.55 | n/a | No Hit | |||
| JUN_HUMAN | -0.15 | 0.76 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood