rs926271 chr1:11909860 A>G
- Sequence
aaaattggtttaaaactcagaatt[A/G]ttcctctccacggaaatctttagt
- ASB in cell types
- D283 Med (medulloblastoma) D341 Med (medulloblastoma) liver HepG2 (hepatoblastoma)
- ASB for transcription factors
- NDF1_HUMAN RFOX2_HUMAN SMAD5_HUMAN SP1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NDF1_HUMAN | 1.61 | -0.67 | 1.42 | n/a | No Hit | |||
| RFOX2_HUMAN | 1.55 | -0.95 | 1.42 | n/a | n/a | |||
| SMAD5_HUMAN | 1.81 | -2.10 | 1.50 | n/a | n/a | |||
| SP1_HUMAN | 1.48 | 0.13 | 1.25 | n/a | No Hit | |||
| T2EB_HUMAN | 2.08 | -2.97 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Testis, Whole_Blood