rs9275370 chr6:32700481 C>T
- Sequence
aacaaaagcagactttaactcctg[C/T]tccagccatgcttctttgcttctc
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) foreskin keratinocyte neural cell
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN CEBPG_HUMAN ATF4_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.31 | 0.38 | 1.71 | n/a | No Hit | |||
| RAD21_HUMAN | 0.95 | -1.01 | 1.33 | n/a | n/a | |||
| CEBPG_HUMAN | 2.30 | n/a | 3.00 | n/a | No Hit | |||
| ATF4_HUMAN | 2.82 | n/a | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood