rs9275371 chr6:32700519 T>C
- Sequence
ctttgcttctcaaacatccaaaac[T/C]gcatctcagattgcatcatattct
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) foreskin keratinocyte neural cell
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN ZN143_HUMAN TRI22_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.23 | 0.25 | 1.44 | n/a | No Hit | |||
| RAD21_HUMAN | 0.77 | -0.60 | 1.33 | n/a | n/a | |||
| ZN143_HUMAN | 1.77 | n/a | 1.33 | n/a | No Hit | |||
| TRI22_HUMAN | 1.46 | -1.21 | 1.33 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GRASP body mass index (bmi), crohns disease, cystatin c in serum, hdl cholesterol, height, joint damage severity in rheumatoid arthritis, ldl cholesterol, parkinsons disease, parkinsons disease (pd), rheumatoid arthritis, rheumatoid arthritis (acpa-positive), sarcoidosis, serum creatinine, stabilized warfarin dose, systemic sclerosis, tetrology of fallot, total cholesterol, transmission distortion, triglycerides, type 1 diabetes, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood