rs9285474 chr6:133552348 A>C
- Sequence
gtattcttggcttgaggaataatg[A/C]aacgtgatctcaagacaagatagg
- ASB in cell types
- A549 (lung carcinoma)
- ASB for transcription factors
- GCR_HUMAN EP300_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.47 | 1.31 | 1.36 | n/a | No Hit | |||
| EP300_HUMAN | 0.02 | 1.01 | 1.20 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Coronary, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Ovary, Spleen, Stomach, Testis, Thyroid