rs9306231 chr22:19942479 C>G
- Sequence
gctccaccaggaaggggcccagga[C/G]tccccagggtcggggggatgtgtg
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney)
- ASB for transcription factors
- ZIC2_HUMAN IKZF1_HUMAN P66B_HUMAN NRF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZIC2_HUMAN | 3.06 | n/a | 2.00 | n/a | n/a | |||
| IKZF1_HUMAN | n/a | 3.45 | 4.00 | n/a | No Hit | |||
| P66B_HUMAN | n/a | 3.14 | 4.00 | n/a | n/a | |||
| NRF1_HUMAN | n/a | 1.62 | 4.00 | n/a | No Hit | |||
| HDAC2_HUMAN | n/a | 2.69 | 4.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Lung, Nerve_Tibial, Pancreas, Testis, Whole_Blood