rs93075 chr17:77374386 T>G
- Sequence
gtgcgtgcgctttcctgcgtcctc[T/G]tgactgccggtgctggggctctgc
- ASB in cell types
- GM12878 (female B-cells) CD14+ monocytes tibial nerve upper lobe of left lung
- ASB for transcription factors
- STAT1_HUMAN ZNF10_HUMAN GLIS2_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | -1.75 | 2.20 | 2.50 | n/a | No Hit | |||
| ZNF10_HUMAN | n/a | 2.35 | 2.00 | n/a | n/a | |||
| GLIS2_HUMAN | -2.97 | 2.31 | 2.00 | n/a | n/a | |||
| IKZF2_HUMAN | -1.55 | 1.73 | 1.33 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), hypertension (early onset hypertension), ldl cholesterol, total cholesterol, triglycerides
GTEx eQTL Artery_Aorta, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Ovary, Thyroid, Whole_Blood