rs9405636 chr6:3383819 T>C
- Sequence
cggggctgagagggccccctgagg[T/C]cctactatgcgcctgaccagccac
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells)
- ASB for transcription factors
- HDAC2_HUMAN MEF2B_HUMAN SMCA4_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HDAC2_HUMAN | 2.50 | n/a | 3.00 | n/a | n/a | |||
| MEF2B_HUMAN | -1.95 | 1.77 | 1.33 | n/a | No Hit | |||
| SMCA4_HUMAN | 2.14 | n/a | 3.00 | n/a | n/a | |||
| IKZF1_HUMAN | 1.49 | 1.19 | 2.17 | n/a | No Hit | |||
| ATF4_HUMAN | 2.83 | n/a | 3.00 | n/a | No Hit |
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Motif analysis
