rs942643 chr6:33700593 A>G
- Sequence
ctgctctctaactgcatttcacct[A/G]ggccctgggcaaccagaggccagg
- ASB in cell types
- K562 (myelogenous leukemia) PC9 (lung adenocarcinoma) AG10803 (fibroblasts) GM12878 (female B-cells)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.80 | 0.47 | 1.48 | n/a | No Hit | |||
| RAD21_HUMAN | 0.79 | 0.56 | 1.40 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP body mass index (bmi), college completion, diabetic retinopathy in type 2 diabetes mellitus, fasting blood glucose, height, obesity (body mass index (bmi)), rheumatoid arthritis, rheumatoid arthritis (acpa-positive), years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood