rs9435695 chr1:16905229 A>G
- Sequence
tgtagagcacatgttatggttatc[A/G]aagtggtttactgtaaggctgagg
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) GM12878 (female B-cells) fetal bone marrow-derived mononuclear cells
- ASB for transcription factors
- TBP_HUMAN MNT_HUMAN KDM5B_HUMAN GABPA_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBP_HUMAN | 2.59 | -2.36 | 1.44 | n/a | No Hit | |||
| MNT_HUMAN | 1.76 | -1.82 | 2.31 | n/a | n/a | |||
| KDM5B_HUMAN | 2.88 | -3.44 | 1.50 | n/a | n/a | |||
| GABPA_HUMAN | 1.78 | 0.12 | 1.61 | n/a | No Hit | |||
| PML_HUMAN | 2.55 | -0.53 | 1.83 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Whole_Blood