rs9504369 chr6:5261342 T>C
- Sequence
cgccctcggcgctgcctgagagag[T/C]ttgcgggatttcaagggtgacttg
- ASB in cell types
- HepG2 (hepatoblastoma) LNCaP C4-2B (prostate carcinoma) prostate gland foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN ZFX_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.26 | 1.30 | 1.93 | n/a | No Hit | |||
| ZFX_HUMAN | -0.55 | 1.14 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Pancreas, Thyroid, Whole_Blood