rs951623 chr1:212225720 T>C
- Sequence
accaaggtgttaatgacgtaactc[T/C]ctcctcacaggaaaagctgctctg
- ASB in cell types
- GM12878 (female B-cells) HepG2 (hepatoblastoma)
- ASB for transcription factors
- ATF7_HUMAN IKZF1_HUMAN ATF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF7_HUMAN | -0.31 | 2.94 | 1.33 | n/a | n/a | |||
| IKZF1_HUMAN | -0.91 | 2.18 | 1.33 | n/a | No Hit | |||
| ATF2_HUMAN | -0.74 | 2.22 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Caudate_basal_ganglia, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Esophagus_Mucosa, Lung, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood