rs966283 chr10:3290057 G>A
- Sequence
gctgccctcccgtaaggcatcacc[G/A]cccccgccaacctctcctacctcc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ESR1_HUMAN GATA3_HUMAN PRGR_HUMAN COT2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 0.56 | 1.87 | 2.65 | n/a | No Hit | |||
| GATA3_HUMAN | -0.00 | 1.72 | 1.83 | n/a | No Hit | |||
| PRGR_HUMAN | n/a | 1.59 | 1.33 | n/a | No Hit | |||
| COT2_HUMAN | n/a | 2.02 | 2.00 | n/a | No Hit | |||
| CREB1_HUMAN | -0.83 | 1.48 | 1.75 | -0.03 | Weak Discordant |
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Motif analysis
